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Under the microscope

Hereditary blindness cured?

A Tasmanian-led research team has successfully altered eye tissue in a laboratory by replacing genes that cause blindness with normal genes.

The team used molecular gene shears deployed through a simple injection into the eye. The shears latched on to individual eye cells, chopped out DNA fragments containing rogue genes, and replaced them with normal genes.

Lead researcher Associate Professor Alex Hewitt, from the University of Tasmania’s Menzies Institute, said regulators would need to be satisfied that the technique was safe, and that the shears could be turned off once they had done their job before starting human trials.

Human medical trials are expected to commence in less than five years.

For more information visit http://www.menzies.utas.edu.au/home/nested-content/feature-large/our-research-is-leading-the-way-towards-prevention-and-better-treatment-of-inherited-eye-diseases

Low rates of cervical cancer screening

A report by the Australian Institute of Health and Welfare has found that only three in five eligible Australian women had a pap test in the past two years.

In 2013-2014, 3.8 million women aged 20 to 69 years (57 per cent) participated in cervical screening.

Despite the low participation rate, Australia’s cervical cancer rates are considered low by international standards.

In 2012, there were 725 new cases of cervical cancer diagnosed and in 2013 there were 149 deaths. This is equivalent to between nine and ten new cases of cervical cancer diagnosed per 100,000 women and two deaths from cervical cancer per 100,000 women.

For more information the report, Cervical screening in Australia 2013-2014, can be found at http://www.aihw.gov.au/publication-detail/?id=60129554885

Pain leading cause of severe behaviour in dementia

Existing or undiagnosed pain has been linked to severe behavioural symptoms associated with dementia, according to Australian researchers.

Associate Professor Stephen Macfarlane, Head of the Clinical Governance for the Dementia Centre for HammondCare, and his research team identified that in 65 per cent of cases, pain was the main contributing factor to severe behaviours in dementia patients. Other leading factors included environment (60 per cent), limited carer knowledge (38 per cent), and depression (21 per cent).

Associate Professor Macfarlane said that it was common to find that, instances where pain contributed to behaviours involving aggression, agitation, and anxiety for dementia patients, that once it was alleviated the intensity of such behaviours was significantly reduced.

“Pain is an enormous issue for people living with dementia, and for older people generally, and is often undiagnosed as a contributing factor to behaviours,” Associate Professor Macfarlane said.

For more information visit – http://www.hammond.com.au/news/pain-major-contributing-factor-for-severe-behaviours-in-dementia

Malaria’s weakness exploited

Australian National University researchers have found that changes in the protein that enables a malaria parasite to evade several anti-malaria drugs also make the parasite hyper-sensitive to other therapies – a weakness that could be exploited to cure the deadly disease.

The researchers said the findings could prolong the use of several anti-malarial drugs to treat the disease which kills 600,000 people around the world each year.

Lead researcher Dr Rowena Martin said the interactions of the modified protein with certain drugs were so intense that it was unable to effectively perform its normal role, which was essential to the parasite’s survival.

“Essentially, the parasite can’t have its cake and eat it too. So if an anti-malaria drug is paired with a drug that is super-active against the modified protein, no matter what the parasite tries to do it’s checkmate for malaria.”

The study was published in the PLOS Pathogens journal.

Whole-genome testing now available

Australia has its first clinical whole-genome sequencing service which could triple the diagnosis rates for Australians living with rare and genetic conditions.

The service was launched by the Garvan Institute of Medical Research’s Kinghorn Centre for Clinical Genomics. Director Professor John Mattick said the service marked a turning point in disease diagnosis and health care in Australia.

Patients seeking a diagnosis for a possible genetic condition will be referred to a clinical genetic service which will work with NSW Health Pathology to assess whether whole genome sequencing can provide an answer.

Those who may benefit will then be able to access the service, which will screen all 20,000 genes at one time.

The simple blood test costs $4300, and has the capacity to identify the biological cause of illnesses so rare only a handful of people have the condition worldwide.

For more information visit http://www.garvan.org.au/research/kinghorn-centre-for-clinical-genomics/clinical-genomics/sequencing-services

Kirsty Waterford

Low HIV testing rates among people with a sexually transmissible infection diagnosis in remote Aboriginal communities

The known  Sexually transmissible infection (STI) guidelines recommend full STI screening, including testing for HIV and syphilis, for people diagnosed with any STI.

The new  Analysis of clinical data for 2010–2014 from 65 remote Aboriginal communities indicated that about one-third of people with positive test results for chlamydia, gonorrhoea or trichomoniasis were tested for HIV within 30 days of the STI test, as were about one-half of those tested for syphilis.

The implications  Adhering to HIV and syphilis screening recommendations is clearly an area for improvement in the delivery of sexual health services to remote communities.

A significant challenge in Aboriginal and Torres Strait Islander health is averting a major outbreak of human immunodeficiency virus infection (HIV) as has occurred in indigenous populations in other countries.1,2 Although the number of HIV diagnoses among Aboriginal people has been relatively stable over the past 20 years, there are now early warning signs of an increase. The number of cases is small, but standardised population rates of HIV diagnoses in Indigenous and non-Indigenous Australians have diverged over the past 5 years: the population rate is now almost twice as high for Aboriginal as for Australian-born non-Indigenous people (5.9 per 100 000 v 3.7 per 100 000 population). In addition, there are differences in the way HIV is transmitted in the two populations: a higher proportion of infections among Aboriginal people are attributed to injecting drug use (16% v 3%) or heterosexual sex (20% v 13%), and the proportion of female patients is higher (22% v 5%) than among non-Indigenous Australians.3

There are several risk factors for HIV, including social, psychological and individual aspects. However, of particular significance for the Aboriginal population are the higher endemic rates of sexually transmissible infections (STIs) such as chlamydia, gonorrhoea and trichomoniasis,4,5 as well as an ongoing outbreak of syphilis (almost 1000 cases across northern and remote Australia),6 all of which increase the risk of HIV transmission.7

One of the critical factors for preventing HIV in any population is timely, targeted and appropriate testing. In Australia, HIV and STI care guidelines include specific recommendations for Aboriginal and Torres Strait Islander populations,8,9 including testing for an undiagnosed HIV infection when another STI is diagnosed. Timely testing and diagnosis can prevent the spread of HIV, as people may reduce their sexual risk behaviour once they are aware of their positive status.10 Further, early detection can facilitate early treatment, and the risk of transmission remains extremely low if individuals can sustain an undetectable HIV viral load by adhering to highly active anti-retroviral treatments.11,12

Despite awareness for more than two decades of the very high notification rates of chlamydia, gonorrhoea, trichomoniasis and syphilis in many remote communities, there is a gap in our knowledge about the extent of HIV testing, including concurrent testing with other STI diagnostic testing. We report here on an analysis of clinical and laboratory records from 65 remote Aboriginal communities participating in the randomised, controlled community trial, STRIVE (STI in remote communities: improved and enhanced primary health care).13 The communities are located in four regions (two in the Northern Territory, one in northern Western Australia and one in Far North Queensland; anonymised in our reported results), and the approximate combined community population of people aged 16–34 years was 28 000 according to Australian Bureau of Statistics data. The trial examined whether a sexual health quality improvement program could increase STI testing to a level sufficient to reduce the community prevalence of STIs. Our aim was to determine the level of concurrent HIV testing of individuals who had received positive results for chlamydia, gonorrhoea or trichomoniasis, and of concurrent HIV testing of people tested for syphilis.

Methods

The STRIVE trial collected de-identified data from pathology laboratories for the period January 2010 – December 2014. The primary outcome of our study was the rate of concurrent HIV testing (same day testing, or within 30 or 90 days of the diagnostic test for chlamydia, gonorrhoea or trichomoniasis) of people who tested positive for any of these three STIs. HIV testing referred to any HIV screening test conducted by the laboratory; no HIV rapid tests were used by the participating health services.

The unit of analysis was the episode of STI testing (tests for any of the three STIs on the same date). All episodes of STI testing that resulted in a positive result for any of the three STIs were included in the denominator for calculating the HIV testing rate. We focused on chlamydia, gonorrhoea and trichomoniasis because urine or a swab is collected when testing for these STIs, but not blood (which is needed for HIV testing). We selected 30 days as the cut-off point because most people would return for STI treatment within this period, and there would be an opportunity to collect blood for HIV testing if it had not been collected at the initial consultation. We separately analysed the period 1–30 days (ie, excluding same day HIV testing) and testing within 90 days.

Secondary outcomes were the rate of concurrent syphilis testing (within 30 days of a positive STI test), and the rate of HIV testing (on the same day and within 30 days of the syphilis test) among people tested for syphilis (regardless of the test result), as syphilis testing requires collecting blood, thereby making HIV testing more convenient. We analysed syphilis separately from the other three STIs because it was difficult to distinguish between latent and infectious syphilis cases on the basis of the datasets to which we had access; for latent cases, the decision as to whether an HIV test should be ordered would be determined by the clinician.

We used multivariate logistic regression to determine factors independently associated with HIV testing and syphilis testing within 30 days of an STI test with a positive result. Age group, sex, year, geographic region, and year of the positive test were included in the model. We examined models adjusted for clustering by patient, clinic, and region, and also a model with a patient random effect, as it accounted for most variation; this final version is reported in this article. All analyses were conducted in Stata 14 (StataCorp).

Ethics approval

The STRIVE trial was approved by the Central Australian Human Research Ethics Committee (HREC) (reference, 2009.11.03), the HREC of the NT Department of Health and Families and the Menzies School of Health Research (reference, 09/98), the University of New South Wales HREC (B) (reference, HREC 10112), the WA Aboriginal Health Information and Ethics Committee (reference, 267-11/09), the WA Country Health Service Board Research Ethics Committee (reference, 2010: 04), and the Cairns and Hinterland, Cape York, Torres Strait and Northern Peninsula HREC (reference, HREC/09/QCH/122). Participating health services signed a site participation agreement before commencing involvement in STRIVE.

Results

During the 2010–2014 study period, there were 15 260 positive test results for STIs (chlamydia, gonorrhoea or trichomoniasis), including 4190 in men and 11 055 in women; there were 5015 positive chlamydia, 4546 positive gonorrhoea and 8954 positive trichomoniasis test results. Of the 15 260 positive test results, 31.8% were associated with an HIV test within 30 days, including 5.6% between 1 and 30 days (ie, excluding same day testing) (Box 1); 34.8% were associated with an HIV test within 90 days (data not shown). When analysed by geographical region, the proportion of people with a positive STI test who had an HIV test within 30 days ranged between 29.6% and 40.2%. Of all people tested for syphilis (regardless of the test result), 53.4% were also tested for HIV within 30 days (Box 2). Further, 44.1% of those who received a positive STI test result were tested for syphilis within 30 days of the STI test (Box 1).

Multivariate analysis found that HIV testing within 30 days of a positive STI test was more likely for men, in geographical regions 3 and 4 (v region 1; and less likely in region 2), and in association with positive STI test results during 2012, 2013 or 2014 (v 2010) or with positive STI tests for gonorrhoea or chlamydia (v other two STIs combined). Similar associations pertained to syphilis testing within 30 days of an STI test with a positive result (Box 3).

Discussion

We found a low rate of HIV testing within 30 days of an STI diagnostic test with a positive result in remote communities with persistently high rates of curable STIs. About one-third of all people with positive STI test results were tested for HIV within 30 days, irrespective of age group. The rate was significantly higher in men, which may reflect more full STI screens being undertaken in men presenting with symptoms or risk behaviour. There was a slightly higher rate of HIV testing when blood for syphilis testing was collected, but it was still less than optimal according to current clinical recommendations. Most HIV testing occurred on the same day as other STI testing (94%), suggesting that full STI screens were being undertaken.

The rate of HIV testing within 30 days of the STI test varied somewhat between health services in different geographical regions, but did not exceed 40.2% in any region. The low rate of HIV testing we observed is not confined to communities in northern Australia. Preliminary data from a study of four Aboriginal primary health care services in urban and regional areas of New South Wales also indicate that the rate of HIV testing associated with a positive STI diagnosis was low (42%), and, similar to what we found, most tests (82%) were conducted on the same day as the other STI test.14

We found that the rate of HIV testing within 30 days of an STI test with a positive result increased across the STRIVE study period; a formal analysis is evaluating whether this difference can be attributed to the intervention.

The strengths of our study include the large dataset, comprising data for patients with an STI diagnosis from 65 remote communities across the NT, WA and Queensland. In addition, capture of records of STI testing was complete, as each community participating in STRIVE has only one clinical service provider and used one of three pathology laboratories that provided data on all testing undertaken during the study period. A limitation is that we only had access to information for those who consented to HIV testing; it is therefore possible that some individuals were offered testing but declined. We did not collate the results of HIV testing in the study, and it is possible that some patients known to be HIV-positive were included in the study, who would therefore not have required HIV testing. However, this would only account for a very small number of people, given the low rate of HIV-positivity in remote health services.

HIV testing is important at the patient level and from a public health perspective, ensuring that people with HIV are identified quickly in order to reduce transmission by individuals who may not know their status, to enable rapid contact tracing, an efficient strategy for identifying undiagnosed infections,15 and so that patients with HIV can start treatment as early as possible.

Our study identified adherence to HIV screening recommendations as an area in the delivery of sexual health services to remote communities that clearly needs to be improved. Barriers to offering HIV testing in these settings should be investigated. Urgently needed are training and systems that increase awareness of clinical guidelines among clinical staff and support their implementing these guidelines when testing for STIs in remote communities. As nearly 40% of young people in the services we investigated had been diagnosed with at least one of the three STIs,4 and in view of the current syphilis outbreak, offering a full STI screen is likely to be an efficient way to improve HIV testing rates. Failure to increase HIV testing risks an outbreak that may be difficult to control in remote settings. HIV testing should be a priority, and its uptake should be routinely audited by those managing sexual health programs or remote area clinics.

Box 1 –
HIV testing of people aged 16–34 years attending 65 remote primary health care services within 30 days of a sexually transmissible infection (STI)* diagnostic test for which the result was positive, 2010–2014

Any positive STI test

Testing within 30 days of the STI test (including same day)


Testing within 30 days of the STI test (excluding same day)


HIV

Syphilis

HIV

Syphilis


Total

15 260

4858 (31.8%)

6727 (44.1%)

854 (5.6%)

1099 (7.2%)

Sex

Men

4190

2035 (48.6%)

2355 (56.2%)

208 (5.0%)

209 (5.0%)

Women

11 055

2815 (25.5%)

4361 (39.4%)

646 (5.8%)

889 (8.0%)

Age group (years)

16–19

3924

1305 (33.3%)

1761 (44.9%)

259 (6.6%)

302 (7.7%)

20–24

3827

1282 (33.5%)

1777 (46.4%)

233 (6.1%)

300 (7.8%)

25–29

2486

819 (33.0%)

1106 (44.5%)

119 (4.8%)

171 (6.9%)

30–34

1597

498 (31.2%)

686 (42.9%)

83 (5.2%)

112 (7.0%)

≥ 35

3416

954 (27.9%)

1397 (40.9%)

163 (4.8%)

214 (6.3%)

Region

1

4320

1314 (30.4%)

1528 (35.4%)

121 (2.8%)

161 (3.7%)

2

7670

2269 (29.6%)

3639 (47.4%)

435 (5.7%)

633 (8.3%)

3

1087

437 (40.2%)

620 (57.0%)

131 (12.1%)

105 (9.7%)

4

2183

838 (38.4%)

940 (43.1%)

170 (7.8%)

200 (9.2%)

Year

2010

2658

765 (28.8%)

1095 (41.2%)

167 (6.3%)

193 (7.3%)

2011

2994

907 (30.3%)

1389 (46.4%)

196 (6.5%)

253 (8.5%)

2012

3044

935 (30.7%)

1372 (45.1%)

175 (5.7%)

220 (7.2%)

2013

3133

990 (31.6%)

1347 (43.0%)

138 (4.4%)

205 (6.5%)

2014

3425

1261 (36.8%)

1524 (44.5%)

181 (5.3%)

228 (6.7%)

Type of infection

Chlamydia

5015

1883 (37.5%)

2439 (48.6%)

361 (7.2%)

396 (7.9%)

Gonorrhoea

4546

1787 (39.3%)

2101 (46.2%)

279 (6.1%)

342 (7.5%)

Trichomoniasis

8954

2360 (26.4%)

3703 (41.4%)

437 (4.9%)

638 (7.1%)


* Chlamydia, gonorrhoea or trichomoniasis. † Missing values not included. ‡ Data missing for 15 people.

Box 2 –
HIV testing of people aged 16–34 years attending 65 remote primary health care services within 30 days of a test for syphilis, 2010–2014

Syphilis test*

HIV testing within 30 days (including same day)


Total

46 744

24 961 (53.4%)

Sex

Men

19 718

11 743 (59.6%)

Women

26 961

13 192 (48.9%)

Age group (years)

16–19

6481

3640 (56.2%)

20–24

9306

5114 (55.0%)

25–29

8095

4512 (55.7%)

30–34

6295

3474 (55.2%)

≥ 35

16 553

8220 (49.7%)

Region

1

8221

4765 (58.0%)

2

27 533

13 369 (48.6%)

3

4978

2124 (42.7%)

4

6012

4703 (78.2%)

Year

2010

7576

2765 (36.5%)

2011

9546

3802 (39.8%)

2012

9812

5228 (53.3%)

2013

9559

6043 (63.2%)

2014

10 241

7123 (69.6%)


* Missing values not included.

Box 3 –
Multivariate model of HIV and syphilis testing within 30 days of a sexually transmissible infection (STI)* diagnostic test for which the result was positive (including same day as initial test)

HIV test within 30 days


Syphilis test within 30 days


Odds ratio

95% CI

P

Odds ratio

95% CI

P


Sex

Women

1

1.00

Men

2.67

2.43–2.92

< 0.01

2.12

1.95–2.31

< 0.01

Age group (years)

16–19

1

1.00

20–24

1.07

0.96–1.19

0.23

1.08

0.98–1.20

0.11

25–29

1.08

0.96–1.22

0.20

1.03

0.92–1.15

0.61

30–34

1.06

0.92–1.23

0.42

0.99

0.87–1.13

0.94

≥ 35

0.93

0.82–1.05

0.22

0.87

0.78–0.97

0.01

Region

1

1

1.00

2

0.87

0.79–0.95

< 0.01

0.52

0.50–0.57

< 0.01

3

1.52

1.30–1.77

< 0.01

1.43

1.24–1.66

< 0.01

4

1.28

1.14–1.44

< 0.01

0.74

0.67–0.83

< 0.01

Year

2010

1

1.00

2011

1.10

0.97–1.25

0.13

1.30

1.16–1.45

< 0.01

2012

1.14

1.01–1.30

0.04

1.25

1.12–1.40

< 0.01

2013

1.24

1.09–1.40

< 0.01

1.17

1.04–1.31

0.01

2014

1.61

1.42–1.82

< 0.01

1.24

1.11–1.39

< 0.01

Type of infection

Chlamydia

1.28

1.10–1.34

< 0.01

1.22

1.11–1.34

< 0.01

Gonorrhoea

1.52

1.16–1.42

< 0.01

1.11

1.01–1.22

0.03

Trichomoniasis

0.87

0.84–1.05

0.24

1.10

0.99–1.21

0.08


* Chlamydia, gonorrhoea or trichomoniasis. † The model was adjusted for individual clustering by including an individual patient random effect. ‡ Reference group for each comparison consists of patients with the other two sexually transmissible infections.

[Correspondence] The first recorded use of microscopy in medicine: Pope Innocent XII’s autopsy report

In the history of medicine, the discovery and the use of the microscope in clinical practice and biomedical research was a revolutionary achievement. The cultural shift from the traditional macroscopic necroscopy to a microscopic and ultrastructural perspective was essential for the development of modern pathology and for recognising physiopathological mechanisms of several diseases. Physicians started to use the microscope during the 17th century, but they initially limited its use to anatomical, and not pathological, studies.

Next-generation sequencing for diagnosis of rare diseases in the neonatal intensive care unit [Research]

Background:

Rare diseases often present in the first days and weeks of life and may require complex management in the setting of a neonatal intensive care unit (NICU). Exhaustive consultations and traditional genetic or metabolic investigations are costly and often fail to arrive at a final diagnosis when no recognizable syndrome is suspected. For this pilot project, we assessed the feasibility of next-generation sequencing as a tool to improve the diagnosis of rare diseases in newborns in the NICU.

Methods:

We retrospectively identified and prospectively recruited newborns and infants admitted to the NICU of the Children’s Hospital of Eastern Ontario and the Ottawa Hospital, General Campus, who had been referred to the medical genetics or metabolics inpatient consult service and had features suggesting an underlying genetic or metabolic condition. DNA from the newborns and parents was enriched for a panel of clinically relevant genes and sequenced on a MiSeq sequencing platform (Illumina Inc.). The data were interpreted with a standard informatics pipeline and reported to care providers, who assessed the importance of genotype–phenotype correlations.

Results:

Of 20 newborns studied, 8 received a diagnosis on the basis of next-generation sequencing (diagnostic rate 40%). The diagnoses were renal tubular dysgenesis, SCN1A-related encephalopathy syndrome, myotubular myopathy, FTO deficiency syndrome, cranioectodermal dysplasia, congenital myasthenic syndrome, autosomal dominant intellectual disability syndrome type 7 and Denys–Drash syndrome.

Interpretation:

This pilot study highlighted the potential of next-generation sequencing to deliver molecular diagnoses rapidly with a high success rate. With broader use, this approach has the potential to alter health care delivery in the NICU.

[Viewpoint] From epidemiological transition to modern cardiovascular epidemiology: hypertension in the 21st century

In 1971, Omran formulated the theory of epidemiological transition to explain the shift in mortality and disease patterns worldwide.1 The theory begins with the major premise that mortality is a fundamental factor in population dynamics. At the beginning of time was the age of so-called pestilence and famine. Mortality was high; life expectancy around 20–30 years; and famine, injuries, and infectious diseases were common causes of death. The first transition took place around 10 000 years ago which brought the world into the age of receding pandemics.

[Comment] Haemopoietic stem-cell transplantation for multiple sclerosis: what next?

With approximately 2 million people affected worldwide, multiple sclerosis is among the most common chronic inflammatory diseases of the CNS, and despite major therapeutic advances in recent years, the disease is still insufficiently controlled in many patients.1 It is thought to be caused by autoimmunity. Therefore, resetting the adaptive immune system by eliminating aberrant self-reactive immune cells and inducing a more tolerant immunity is a potential treatment. Indeed, immunoablation and subsequent autologous haemopoietic stem-cell transplantation (aHSCT) have been investigated in patients with treatment-refractory multiple sclerosis.

[Correspondence] The need for global R&D coordination for infectious diseases with epidemic potential

The relentless increase of public health crises caused by emergent, often life-threatening infectious diseases—eg, Nipah virus infection, severe acute respiratory syndrome, avian influenza, Middle East respiratory syndrome, Ebola virus disease, chikungunya, Zika virus infection, and now yellow fever—needs no introduction. In an increasingly globalised world, a coherent global response is needed, not only in the immediate care of patients and countermeasures to transmission but also in the prompt initiation of research efforts.

Australian Burden of Disease Study: impact and causes of illness and death in Australia 2011—summary report

This summary report presents key findings from the Australian Institute of Health and Welfare’s report: Australian Burden of Disease Study: Impact and causes of illness and death in Australia 2011. It provides estimates of the burden due to different diseases and injuries in Australia and the contribution of various risk factors to this burden. It includes new analyses of the burden attributed to all dietary risk factors included in the study.

[Comment] Therapies of lysosomal storage disorders targeting the brain

Therapies for lysosomal storage disorders such as enzyme replacement have become increasingly available over the past decade. Although clinical benefit has been reported for some disease aspects, important limitations come into play when the brain is involved.1 Intrathecal rather than intravenous enzyme delivery is the focus of studies for diseases with predominant cerebral involvement, such as metachromatic leukodystrophy, but results are pending. Direct delivery of the deficient enzyme by means of stereotactic injections of recombinant viral vectors into the brain might offer a therapeutic alternative, and is also under investigation for metachromatic leukodystrophy.

[Comment] End-of-life care across the world: a global moral failing

The Economist Intelligence Unit (EIU) and its funder, the Lien Foundation, have served humanity well by creating a thoughtful way to grade the availability and quality of care for patients near the end of life across the world; their results expose a dismal situation.1 Modern medicine’s focus on mastering each part of the human body and the diseases that make them malfunction has generated remarkable power to sustain life. But this focus, shared by governments and health-care planners, has neglected the dying and their suffering, as if repressing a shameful secret.